Variant report

Variant	rs4727501
Chromosome Location	chr7:101244689-101244690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101242393..101247738-chr7:101456834..101460384,5	MCF-7	breast:
2	chr7:101244039..101255564-chr7:101454524..101463981,21	MCF-7	breast:
3	chr7:101239160..101242958-chr7:101243756..101248056,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12532732	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2079402	0.91[ASN][1000 genomes]
rs2108027	0.92[ASN][1000 genomes]
rs55914958	0.95[ASN][1000 genomes]
rs62466276	0.92[ASN][1000 genomes]
rs6465819	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs67986566	0.92[ASN][1000 genomes]
rs6949105	0.92[ASN][1000 genomes]
rs6960162	0.92[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs740198	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv888826	chr7:101230768-101277334	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101241400-101246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:101241600-101245200	Enhancers	Placenta	Placenta
3	chr7:101242200-101245600	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:101242200-101249600	Weak transcription	Spleen	Spleen
5	chr7:101242400-101245400	Weak transcription	HSMM	muscle
6	chr7:101242400-101245800	Weak transcription	HMEC	breast
7	chr7:101242400-101246200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:101242400-101248400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:101242600-101245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:101242600-101245600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:101242600-101245800	Weak transcription	Colonic Mucosa	Colon
12	chr7:101242600-101245800	Weak transcription	Pancreas	Pancrea
13	chr7:101242600-101248600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101242600-101248800	Weak transcription	Fetal Lung	lung
15	chr7:101242800-101245400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:101242800-101245600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:101242800-101246000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr7:101242800-101246000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:101242800-101251600	Weak transcription	Gastric	stomach
20	chr7:101243000-101245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:101243000-101246000	Weak transcription	HSMMtube	muscle
22	chr7:101243200-101245400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:101243200-101246000	Weak transcription	NHDF-Ad	bronchial
24	chr7:101243600-101245600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr7:101244000-101244800	Bivalent Enhancer	HepG2	liver
26	chr7:101244600-101244800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:101244600-101244800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:101244600-101245000	Weak transcription	Fetal Intestine Large	intestine

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