Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10237271	0.88[ASN][1000 genomes]
rs10252981	0.89[ASN][1000 genomes]
rs10255125	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10256096	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10267607	0.91[ASN][1000 genomes]
rs10269389	0.85[ASN][1000 genomes]
rs10274288	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1075221	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10953675	0.93[ASN][1000 genomes]
rs11768116	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531323	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13234228	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13240156	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13242288	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13246026	0.89[ASN][1000 genomes]
rs1390824	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1496779	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1496780	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17384271	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4370469	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6948326	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9640732	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78327800-78341200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:78336200-78338800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78336400-78343800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:78336600-78338000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:78336800-78338600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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