Variant report

Variant	rs4728017
Chromosome Location	chr7:79766397-79766398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79763311..79765795-chr7:79766136..79767729,2	K562	blood:

Variant related genes	Relation type
ENSG00000127955	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10238517	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs10274707	0.81[CHB][hapmap];0.81[MKK][hapmap]
rs2189342	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79763200-79766400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:79763200-79767000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:79763200-79767000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:79763400-79766400	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr7:79763400-79766600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:79763400-79767000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:79763400-79767400	Active TSS	Brain Angular Gyrus	brain
8	chr7:79763600-79766400	Active TSS	Brain Substantia Nigra	brain
9	chr7:79763600-79766400	Active TSS	Right Atrium	heart
10	chr7:79763600-79767400	Active TSS	Brain Hippocampus Middle	brain
11	chr7:79763800-79766400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:79763800-79766800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:79763800-79767000	Active TSS	Brain Anterior Caudate	brain
14	chr7:79763800-79767000	Active TSS	Fetal Brain Male	brain
15	chr7:79763800-79767400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr7:79763800-79767600	Active TSS	Brain Cingulate Gyrus	brain
17	chr7:79764800-79767000	Active TSS	Fetal Brain Female	brain
18	chr7:79765000-79766400	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr7:79765200-79766400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr7:79765200-79767200	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr7:79765200-79769200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:79765400-79766400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:79765400-79766400	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr7:79765400-79767400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:79765400-79769800	Weak transcription	Gastric	stomach
26	chr7:79765600-79766400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr7:79765600-79766400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
28	chr7:79765600-79766400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
29	chr7:79765600-79766400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr7:79765600-79766400	Weak transcription	Small Intestine	intestine
31	chr7:79765600-79766600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:79765600-79766600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr7:79765600-79766600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
34	chr7:79765600-79768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:79765600-79768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:79765600-79775200	Weak transcription	Esophagus	oesophagus
37	chr7:79765800-79766400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:79765800-79766400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
39	chr7:79765800-79766400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr7:79765800-79766400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr7:79765800-79766400	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr7:79765800-79766400	Flanking Active TSS	Osteobl	bone
43	chr7:79765800-79766600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:79765800-79766600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:79765800-79766600	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr7:79766000-79766400	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:79766000-79766400	Enhancers	H9 Cell Line	embryonic stem cell
48	chr7:79766000-79766400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr7:79766000-79766400	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr7:79766000-79766400	Flanking Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links