Variant report

Variant	rs4729388
Chromosome Location	chr7:97493134-97493135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97477704..97479355-chr7:97492611..97494448,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11771498	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv970554	chr7:97489362-97500692	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97477600-97500600	Weak transcription	Thymus	Thymus
2	chr7:97479000-97501000	Weak transcription	Fetal Intestine Large	intestine
3	chr7:97479200-97500800	Weak transcription	Right Ventricle	heart
4	chr7:97479400-97501000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:97479400-97501000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:97479600-97501000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:97479800-97500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:97480200-97500600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:97480600-97498200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:97480600-97498200	Strong transcription	K562	blood
11	chr7:97480600-97498600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:97480800-97498400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:97481000-97500600	Weak transcription	NHDF-Ad	bronchial
14	chr7:97481200-97498000	Weak transcription	Fetal Brain Male	brain
15	chr7:97481400-97500600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:97481400-97500600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:97481400-97500600	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:97481400-97501000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:97481800-97500800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:97481800-97501000	Weak transcription	Fetal Intestine Small	intestine
21	chr7:97481800-97501000	Weak transcription	Gastric	stomach
22	chr7:97481800-97501000	Weak transcription	Pancreas	Pancrea
23	chr7:97481800-97501000	Weak transcription	Spleen	Spleen
24	chr7:97482000-97498200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:97482200-97497800	Weak transcription	HMEC	breast
26	chr7:97482800-97500800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:97483600-97500600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:97483600-97500800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:97483800-97500800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:97484000-97500400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:97484200-97493600	Weak transcription	GM12878-XiMat	blood
32	chr7:97484200-97500600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:97484200-97501000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:97484600-97501000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:97485800-97497000	Weak transcription	Hela-S3	cervix
36	chr7:97486200-97500800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:97486200-97501000	Weak transcription	Fetal Lung	lung
38	chr7:97486600-97501000	Weak transcription	Small Intestine	intestine
39	chr7:97487200-97500800	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:97487600-97497800	Weak transcription	Brain Anterior Caudate	brain
41	chr7:97487800-97495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:97487800-97495000	Weak transcription	Left Ventricle	heart
43	chr7:97487800-97496000	Weak transcription	Brain Germinal Matrix	brain
44	chr7:97487800-97498000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:97487800-97499400	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:97487800-97499800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr7:97487800-97500200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:97487800-97500400	Weak transcription	Brain Angular Gyrus	brain
49	chr7:97487800-97500600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr7:97487800-97500600	Weak transcription	Brain Cingulate Gyrus	brain

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