Variant report

Variant	rs4729916
Chromosome Location	chr7:103095973-103095974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10239626	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10268858	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10953385	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12164055	0.87[EUR][1000 genomes]
rs1859784	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1859785	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1990167	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1990168	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041005	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2079470	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2079471	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2108265	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2190420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2190421	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2214924	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382688	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382690	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382691	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2382692	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34827293	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6465921	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6950547	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6950571	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6957350	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6960052	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6968435	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6979981	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980118	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs733267	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7781140	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7786063	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7786141	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7790690	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7807829	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9918711	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9918713	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2117969	chr7:103092731-103096641	Bivalent/Poised TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103094400-103097800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links