Variant report

Variant	rs4730322
Chromosome Location	chr7:78101811-78101812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10485899	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17150854	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57264101	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60412183	0.84[AMR][1000 genomes]
rs73703414	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78099000-78102400	Weak transcription	Fetal Brain Female	brain
2	chr7:78099600-78102000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:78099600-78104400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:78099800-78106200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:78100000-78102000	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:78100000-78102000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78101000-78102400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:78101200-78102600	Enhancers	HSMMtube	muscle
9	chr7:78101200-78103400	Enhancers	NHDF-Ad	bronchial
10	chr7:78101400-78102200	Enhancers	NHLF	lung
11	chr7:78101400-78103000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:78101400-78103200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:78101400-78103400	Enhancers	Osteobl	bone
14	chr7:78101600-78103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:78101800-78102600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:78101800-78102600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:78101800-78103200	Enhancers	Fetal Heart	heart
18	chr7:78101800-78105600	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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