Variant report

Variant	rs4730569
Chromosome Location	chr7:78547842-78547843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12705836	0.84[ASW][hapmap];0.87[TSI][hapmap]
rs12705859	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1624161	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1642888	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs17151725	0.84[ASW][hapmap];0.84[TSI][hapmap]
rs17505	0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2052403	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7797351	0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7799287	0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs987435	0.81[GIH][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4730569	HGF	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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