Variant report

Variant	rs4731397
Chromosome Location	chr7:127752202-127752203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127746979..127749085-chr7:127751994..127753543,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SND1-1	chr7:127752094-127752329	XLOC_006239

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1108809	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4728084	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4728085	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800110	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127744800-127753200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:127744800-127753400	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:127746400-127753400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:127747000-127753400	Enhancers	Thymus	Thymus
6	chr7:127747800-127753000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:127749000-127752400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:127749000-127752400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:127749200-127752400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:127749200-127752600	Weak transcription	Fetal Brain Female	brain
11	chr7:127749400-127752400	Weak transcription	Brain Anterior Caudate	brain
12	chr7:127749400-127752400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:127749400-127752600	Weak transcription	Brain Angular Gyrus	brain
14	chr7:127749400-127753400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr7:127749600-127753200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:127749600-127753400	Enhancers	Primary B cells from cord blood	blood
17	chr7:127749600-127753400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:127749600-127753400	Enhancers	Fetal Thymus	thymus
19	chr7:127749800-127752400	Enhancers	Primary T cells from cord blood	blood
20	chr7:127749800-127752400	Weak transcription	Placenta	Placenta
21	chr7:127749800-127753200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr7:127749800-127753200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:127749800-127753400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:127750600-127753200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:127750600-127754000	Enhancers	Spleen	Spleen
26	chr7:127751000-127752400	Weak transcription	Esophagus	oesophagus
27	chr7:127751000-127753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:127751400-127752400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:127751400-127752400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:127751400-127752600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:127751400-127752600	Weak transcription	GM12878-XiMat	blood
32	chr7:127751400-127753000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr7:127751600-127752400	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:127752000-127752800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr7:127752000-127753000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr7:127752000-127753400	Enhancers	Fetal Brain Male	brain
37	chr7:127752200-127752400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:127752200-127752800	Enhancers	Primary hematopoietic stem cells	blood
39	chr7:127752200-127752800	Enhancers	Duodenum Mucosa	Duodenum
40	chr7:127752200-127753200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:127752200-127753400	Enhancers	Brain Substantia Nigra	brain
42	chr7:127752200-127754000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links