Variant report

Variant	rs4731437
Chromosome Location	chr7:127912566-127912567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127910354..127913433-chr7:127917206..127919846,3	K562	blood:
2	chr7:127912261..127914100-chr7:127920711..127922537,2	K562	blood:
3	chr7:127904719..127907054-chr7:127912432..127915096,2	K562	blood:
4	chr7:127907822..127910033-chr7:127912137..127914514,2	K562	blood:
5	chr7:127910354..127914440-chr7:127916901..127919443,4	K562	blood:

Variant related genes	Relation type
ENSG00000272915	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10231132	1.00[ASN][1000 genomes]
rs10954177	1.00[ASN][1000 genomes]
rs12532565	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1466146	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731436	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091545	0.87[ASN][1000 genomes]
rs56265982	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979784	0.96[ASN][1000 genomes]
rs73721336	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127908000-127913800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:127908200-127912600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:127908400-127921800	Weak transcription	HSMM	muscle
4	chr7:127910800-127912600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:127911000-127912600	Enhancers	Pancreas	Pancrea
6	chr7:127911400-127912600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:127911600-127912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:127911600-127912600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:127911600-127912600	Bivalent Enhancer	Fetal Brain Male	brain
10	chr7:127911600-127913400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:127911800-127915600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:127912000-127913200	Weak transcription	Gastric	stomach
13	chr7:127912000-127915200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:127912200-127912600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:127912200-127912600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:127912200-127912600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
17	chr7:127912200-127912600	Bivalent Enhancer	Fetal Intestine Large	intestine
18	chr7:127912200-127912600	Bivalent Enhancer	Fetal Stomach	stomach
19	chr7:127912200-127912600	Flanking Active TSS	Right Atrium	heart
20	chr7:127912200-127912800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:127912200-127914400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:127912200-127914600	Weak transcription	Liver	Liver
23	chr7:127912200-127915800	Weak transcription	Spleen	Spleen
24	chr7:127912200-127921600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:127912200-127925200	Weak transcription	Ovary	ovary
26	chr7:127912400-127912600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:127912400-127912600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:127912400-127912600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:127912400-127912600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
30	chr7:127912400-127912600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr7:127912400-127912600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr7:127912400-127913000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:127912400-127914400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr7:127912400-127921400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:127912400-127921600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links