Variant report

Variant	rs4731610
Chromosome Location	chr7:129277488-129277489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129276808..129280826-chr7:129281308..129284691,4	K562	blood:
2	chr7:129247164..129250870-chr7:129275593..129280578,4	K562	blood:
3	chr7:129275613..129278006-chr7:129280857..129282505,2	MCF-7	breast:
4	chr7:129273120..129274620-chr7:129277178..129279087,2	MCF-7	breast:
5	chr7:129248798..129255309-chr7:129271058..129278292,15	MCF-7	breast:
6	chr7:129276390..129278308-chr7:129282002..129283977,2	K562	blood:
7	chr7:129249991..129253152-chr7:129274087..129278698,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273329	Chromatin interaction
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11532743	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12535925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537627	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12537713	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12538512	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12540281	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13233824	0.84[CHB][hapmap]
rs13239849	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13241028	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs13246347	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806626	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402974	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34783564	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35240725	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35343997	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35629686	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4731611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731613	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731618	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59675752	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62489293	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62489334	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71583713	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71583720	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
4	chr7:129253200-129283200	Weak transcription	HSMM	muscle
5	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
6	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
7	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
8	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
9	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:129256600-129284400	Weak transcription	HMEC	breast
11	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
12	chr7:129257600-129282800	Weak transcription	Osteobl	bone
13	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:129257800-129289000	Weak transcription	NHEK	skin
15	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
17	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
18	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
19	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
22	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:129267200-129278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:129267200-129282600	Weak transcription	Primary B cells from cord blood	blood
26	chr7:129267400-129278200	Weak transcription	Psoas Muscle	Psoas
27	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:129270000-129282600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:129270200-129282600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:129270200-129282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:129270400-129285000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr7:129270600-129282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:129271000-129293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:129271400-129278200	Weak transcription	Right Atrium	heart
36	chr7:129272200-129278200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr7:129274800-129282800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:129275000-129278400	Enhancers	Brain Germinal Matrix	brain
40	chr7:129275200-129283200	Weak transcription	Dnd41	blood
41	chr7:129275400-129282600	Weak transcription	Brain Angular Gyrus	brain
42	chr7:129275400-129282800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:129275400-129282800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:129275400-129283000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:129275600-129277800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:129275600-129278000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:129275600-129278000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:129275600-129278000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:129275600-129278000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:129275600-129280000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links