Variant report

Variant	rs4733774
Chromosome Location	chr8:131196683-131196684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13250469	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13278110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1417008	0.83[CHD][hapmap]
rs1549454	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16904215	0.87[CHD][hapmap]
rs16904230	0.83[CHD][hapmap]
rs16904232	0.83[CHD][hapmap]
rs16904236	0.83[CHD][hapmap]
rs16904237	0.83[CHD][hapmap]
rs16904253	0.83[CHD][hapmap]
rs17196525	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17209339	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2045093	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2303444	0.82[CHD][hapmap]
rs2670873	0.80[CHD][hapmap]
rs28407848	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28752214	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35713491	0.89[EUR][1000 genomes]
rs36065517	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3758028	0.83[CHD][hapmap]
rs3871	1.00[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4733773	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988276	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7387355	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7813123	0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7843126	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7846662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv831461	chr8:131159819-131302900	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4733774	FAM84B	cis	cerebellum	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131146600-131206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:131147600-131199800	Weak transcription	Pancreas	Pancrea
3	chr8:131155200-131206800	Weak transcription	Psoas Muscle	Psoas
4	chr8:131163000-131198400	Weak transcription	Fetal Heart	heart
5	chr8:131171000-131208600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:131172200-131198800	Weak transcription	Small Intestine	intestine
7	chr8:131172200-131211600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:131172600-131199800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:131172600-131206800	Weak transcription	Esophagus	oesophagus
10	chr8:131172800-131210800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:131173000-131198600	Weak transcription	Brain Angular Gyrus	brain
12	chr8:131173600-131206600	Weak transcription	Dnd41	blood
13	chr8:131174600-131198800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:131175400-131206000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:131179000-131198800	Weak transcription	Fetal Lung	lung
16	chr8:131179000-131208600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:131179200-131208600	Weak transcription	Fetal Brain Female	brain
18	chr8:131179400-131197200	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:131179400-131199800	Weak transcription	Lung	lung
20	chr8:131179600-131198800	Weak transcription	Fetal Intestine Small	intestine
21	chr8:131179600-131199800	Weak transcription	Spleen	Spleen
22	chr8:131179600-131218400	Weak transcription	Thymus	Thymus
23	chr8:131179800-131198200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:131179800-131198600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:131179800-131198800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:131179800-131199200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:131179800-131205000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:131179800-131206800	Weak transcription	Fetal Thymus	thymus
29	chr8:131179800-131207800	Weak transcription	Brain Germinal Matrix	brain
30	chr8:131180000-131206000	Weak transcription	K562	blood
31	chr8:131180200-131207000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:131181000-131198800	Weak transcription	Fetal Intestine Large	intestine
33	chr8:131181000-131208600	Weak transcription	Right Ventricle	heart
34	chr8:131181000-131224600	Weak transcription	Hela-S3	cervix
35	chr8:131181200-131206000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr8:131181200-131229000	Weak transcription	Aorta	Aorta
37	chr8:131182000-131199400	Weak transcription	Liver	Liver
38	chr8:131184400-131206800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:131185800-131198600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:131186000-131199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:131186000-131206800	Weak transcription	Gastric	stomach
42	chr8:131187800-131209000	Weak transcription	Fetal Stomach	stomach
43	chr8:131188400-131206000	Weak transcription	HSMMtube	muscle
44	chr8:131188600-131198800	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:131189400-131198800	Weak transcription	Left Ventricle	heart
46	chr8:131189400-131203800	Weak transcription	HMEC	breast
47	chr8:131191400-131205800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr8:131191600-131206000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:131191800-131198200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:131191800-131199000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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