Variant report

Variant	rs4734542
Chromosome Location	chr8:102596350-102596351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102375493..102378356-chr8:102595970..102598513,2	MCF-7	breast:
2	chr8:102584397..102586462-chr8:102595922..102598854,2	MCF-7	breast:
3	chr8:102511469..102513508-chr8:102595474..102597315,2	MCF-7	breast:
4	chr8:102584672..102587092-chr8:102594880..102596520,2	MCF-7	breast:
5	chr8:102595468..102600144-chr8:102610576..102613880,7	MCF-7	breast:
6	chr8:102595035..102599988-chr8:102610070..102614354,7	MCF-7	breast:
7	chr8:102593460..102597757-chr8:102598202..102602881,7	MCF-7	breast:
8	chr8:102588119..102597900-chr8:102614552..102624670,18	MCF-7	breast:
9	chr8:102503205..102505151-chr8:102594792..102596968,2	MCF-7	breast:
10	chr8:102525583..102527812-chr8:102595474..102597221,3	MCF-7	breast:
11	chr8:102593559..102596370-chr8:102642553..102644659,2	MCF-7	breast:
12	chr8:102574170..102577190-chr8:102593117..102596726,4	MCF-7	breast:
13	chr8:102594059..102599317-chr8:102614223..102621570,11	MCF-7	breast:
14	chr8:102579728..102581419-chr8:102594217..102596451,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253153	Chromatin interaction
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2030782	0.87[AMR][1000 genomes]
rs4734547	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102583800-102596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:102587000-102597000	Weak transcription	Colonic Mucosa	Colon
4	chr8:102587400-102597000	Weak transcription	Lung	lung
5	chr8:102589200-102599400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:102589600-102599800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:102590400-102597000	Weak transcription	Fetal Brain Male	brain
8	chr8:102590400-102603400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:102590600-102598600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:102592000-102611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:102592200-102596800	Weak transcription	Left Ventricle	heart
14	chr8:102592200-102597800	Weak transcription	Fetal Heart	heart
15	chr8:102593000-102598800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:102593400-102597000	Weak transcription	Fetal Intestine Small	intestine
17	chr8:102593800-102598600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:102594000-102599600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:102594000-102603000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:102594000-102611600	Weak transcription	Fetal Intestine Large	intestine
21	chr8:102594200-102599400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:102594200-102601000	Weak transcription	HMEC	breast
23	chr8:102594200-102603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:102594200-102612000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:102594600-102603600	Weak transcription	Placenta	Placenta
26	chr8:102595000-102596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:102595200-102597400	Enhancers	Liver	Liver
28	chr8:102595200-102597400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr8:102595600-102596400	Flanking Active TSS	A549	lung
30	chr8:102595600-102597400	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr8:102595800-102596400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr8:102595800-102596800	Weak transcription	Pancreas	Pancrea
33	chr8:102595800-102596800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:102595800-102597000	Weak transcription	Esophagus	oesophagus
35	chr8:102595800-102597000	Weak transcription	Gastric	stomach
36	chr8:102595800-102598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:102595800-102600200	Weak transcription	NHEK	skin
38	chr8:102595800-102605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:102596000-102596800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:102596000-102615000	Weak transcription	Stomach Mucosa	stomach
41	chr8:102596200-102596400	Enhancers	Fetal Kidney	kidney

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