Variant report

Variant	rs4734644
Chromosome Location	chr8:103587620-103587621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103586549..103589123-chr8:103624960..103627959,2	MCF-7	breast:
2	chr8:103575313..103581780-chr8:103582663..103591933,12	MCF-7	breast:
3	chr8:103586369..103590138-chr8:103665086..103669436,5	MCF-7	breast:
4	chr8:103582117..103584689-chr8:103587053..103589133,2	K562	blood:
5	chr8:103251256..103253139-chr8:103587490..103589217,2	MCF-7	breast:
6	chr8:103587589..103591283-chr8:103601784..103605142,3	MCF-7	breast:
7	chr8:103585276..103587852-chr8:103591024..103593965,2	K562	blood:
8	chr8:103586965..103590111-chr8:103818887..103822309,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246263	Chromatin interaction
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000048392	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10091076	0.91[ASN][1000 genomes]
rs12547834	1.00[ASW][hapmap]
rs2012106	0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2436890	1.00[ASW][hapmap]
rs2436912	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2511736	1.00[ASW][hapmap]
rs2511741	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv534151	chr8:103563857-103589862	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103550800-103589000	Weak transcription	Right Atrium	heart
2	chr8:103581800-103589200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:103582200-103591200	Weak transcription	K562	blood
4	chr8:103584800-103588400	Weak transcription	Lung	lung
5	chr8:103584800-103588800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:103584800-103589000	Weak transcription	Gastric	stomach
7	chr8:103584800-103589200	Weak transcription	Spleen	Spleen
8	chr8:103584800-103591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:103585000-103588400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:103585600-103589800	Weak transcription	Osteobl	bone
11	chr8:103586800-103588400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103586800-103588800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:103587200-103588400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:103587600-103587800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:103587600-103587800	Enhancers	Adipose Nuclei	Adipose
16	chr8:103587600-103588400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:103587600-103589400	Enhancers	Fetal Lung	lung
18	chr8:103587600-103590000	Enhancers	Primary hematopoietic stem cells	blood
19	chr8:103587600-103590600	Enhancers	Fetal Muscle Leg	muscle
20	chr8:103587600-103592200	Enhancers	Placenta	Placenta

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