Variant report

Variant	rs4735294
Chromosome Location	chr8:95490541-95490542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95490139..95492875-chr8:95730254..95732417,2	MCF-7	breast:
2	chr8:95484765..95487691-chr8:95490267..95491825,2	MCF-7	breast:
3	chr8:95485793..95488112-chr8:95489862..95491650,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction
ENSG00000197275	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10087254	0.88[EUR][1000 genomes]
rs10087503	0.88[EUR][1000 genomes]
rs10095298	0.92[CEU][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs10102233	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10102496	0.81[EUR][1000 genomes]
rs1011249	0.88[EUR][1000 genomes]
rs10112606	0.81[EUR][1000 genomes]
rs10216902	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10504936	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808669	0.88[EUR][1000 genomes]
rs10956913	0.88[EUR][1000 genomes]
rs10956914	0.92[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs12545262	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12679347	0.81[EUR][1000 genomes]
rs12680029	0.81[EUR][1000 genomes]
rs12680213	0.81[EUR][1000 genomes]
rs13248829	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13280849	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs13281619	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1561648	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1598713	0.84[CEU][hapmap]
rs16916788	0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs16916796	0.80[EUR][1000 genomes]
rs16916802	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1872889	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2028428	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2043987	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2046666	0.85[CEU][hapmap]
rs2165405	0.82[EUR][1000 genomes]
rs2197004	0.84[EUR][1000 genomes]
rs2291439	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs2381886	0.88[EUR][1000 genomes]
rs2445721	0.85[CEU][hapmap]
rs2450558	0.85[CEU][hapmap]
rs2450572	0.85[CEU][hapmap]
rs2470739	0.88[CEU][hapmap]
rs2470740	0.85[CEU][hapmap]
rs2470742	0.85[CEU][hapmap]
rs2515153	0.81[CEU][hapmap]
rs28641679	0.82[EUR][1000 genomes]
rs2919654	0.88[CEU][hapmap]
rs2919656	0.83[EUR][1000 genomes]
rs2919659	0.84[EUR][1000 genomes]
rs2919660	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2919662	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2919664	0.84[EUR][1000 genomes]
rs2919667	0.84[EUR][1000 genomes]
rs2919670	0.84[EUR][1000 genomes]
rs2919672	0.89[EUR][1000 genomes]
rs2919673	0.89[EUR][1000 genomes]
rs2921385	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs2921387	0.84[CEU][hapmap]
rs2921389	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2930958	0.96[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs2930961	0.95[GIH][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap]
rs2930962	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2930967	0.88[CEU][hapmap];0.82[TSI][hapmap]
rs2930968	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2930970	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2931633	0.82[EUR][1000 genomes]
rs3019146	0.96[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs3019148	0.84[EUR][1000 genomes]
rs3019154	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs3019279	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs3019284	0.83[EUR][1000 genomes]
rs3098703	0.82[EUR][1000 genomes]
rs3099397	0.82[EUR][1000 genomes]
rs3099398	0.88[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs3099401	0.83[EUR][1000 genomes]
rs4734279	0.88[ASN][1000 genomes]
rs4735292	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4735293	0.86[ASN][1000 genomes]
rs56285115	0.81[EUR][1000 genomes]
rs6980687	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6991077	0.80[EUR][1000 genomes]
rs6999103	0.88[EUR][1000 genomes]
rs6999976	0.84[EUR][1000 genomes]
rs716770	0.81[EUR][1000 genomes]
rs752460	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs9297939	0.88[EUR][1000 genomes]
rs935052	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs957447	0.80[CHD][hapmap]
rs957448	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1835971	chr8:95467241-95490541	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95487800-95492800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:95487800-95500000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:95487800-95500200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:95488000-95498800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:95488000-95499000	Weak transcription	NHDF-Ad	bronchial
6	chr8:95488000-95499200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:95488000-95499200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:95488000-95499400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:95488000-95499400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:95488000-95499400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:95488000-95499400	Weak transcription	Adipose Nuclei	Adipose
12	chr8:95488000-95499400	Weak transcription	Brain Germinal Matrix	brain
13	chr8:95488000-95499400	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:95488000-95499400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:95488000-95499400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:95488000-95499400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:95488000-95499600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:95488000-95499600	Weak transcription	Liver	Liver
19	chr8:95488000-95499600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:95488000-95499600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:95488000-95499600	Weak transcription	Osteobl	bone
22	chr8:95488000-95499800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:95488000-95499800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:95488000-95500000	Weak transcription	GM12878-XiMat	blood
25	chr8:95488000-95500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:95488000-95500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:95488000-95500400	Weak transcription	Primary B cells from cord blood	blood
28	chr8:95488000-95500400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:95488000-95500400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:95488000-95500400	Weak transcription	HMEC	breast
31	chr8:95488000-95500400	Weak transcription	HUVEC	blood vessel
32	chr8:95488000-95501800	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:95488000-95502200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr8:95488000-95503600	Weak transcription	NHEK	skin
35	chr8:95488200-95491600	Weak transcription	HepG2	liver
36	chr8:95488200-95499200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:95488200-95499400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:95488200-95500200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr8:95488200-95501000	Weak transcription	Hela-S3	cervix
40	chr8:95488200-95507800	Weak transcription	NHLF	lung

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