Variant report

Variant	rs4735536
Chromosome Location	chr8:99198040-99198041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99193362..99195766-chr8:99196470..99198946,2	MCF-7	breast:
2	chr8:99197354..99201029-chr8:99202677..99207543,4	MCF-7	breast:
3	chr8:99197086..99199611-chr8:99306001..99308233,3	MCF-7	breast:
4	chr8:99188577..99190258-chr8:99195594..99198169,2	K562	blood:

Variant related genes	Relation type
ENSG00000252558	Chromatin interaction
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086902	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10095850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1129891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319283	0.81[JPT][hapmap]
rs13264255	0.97[ASN][1000 genomes]
rs13276153	0.90[ASN][1000 genomes]
rs2002424	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2053935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2122928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2443568	0.81[JPT][hapmap]
rs2514323	0.81[JPT][hapmap]
rs2514329	0.81[JPT][hapmap]
rs3735885	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3735887	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4734391	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734392	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735538	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62522244	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6991266	0.82[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6996271	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7005080	0.81[JPT][hapmap]
rs7833247	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838769	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs896416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642948	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv14716	chr8:99169690-99199971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
3	chr8:99192200-99201000	Weak transcription	Fetal Heart	heart
4	chr8:99192200-99205800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:99193400-99206400	Weak transcription	Pancreas	Pancrea
9	chr8:99194800-99216600	Weak transcription	Colonic Mucosa	Colon
10	chr8:99195800-99198600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:99196200-99198200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:99196200-99198200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:99196200-99198200	Enhancers	NHDF-Ad	bronchial
14	chr8:99196200-99198400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:99196400-99198200	Enhancers	Right Ventricle	heart
16	chr8:99196400-99204800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:99196600-99198200	Enhancers	Left Ventricle	heart
18	chr8:99196600-99198400	Enhancers	Ovary	ovary
19	chr8:99197000-99198200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:99197000-99204800	Weak transcription	Fetal Intestine Large	intestine
21	chr8:99197000-99205000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:99197000-99209200	Weak transcription	HSMMtube	muscle
23	chr8:99197000-99210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:99197000-99219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:99197200-99198600	Weak transcription	Adipose Nuclei	Adipose
26	chr8:99197400-99206200	Weak transcription	Aorta	Aorta
27	chr8:99197400-99206200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:99197600-99198200	Enhancers	Esophagus	oesophagus
29	chr8:99197800-99204800	Weak transcription	Right Atrium	heart
30	chr8:99197800-99215400	Weak transcription	Fetal Stomach	stomach
31	chr8:99198000-99198200	Enhancers	Lung	lung
32	chr8:99198000-99198200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr8:99198000-99210400	Weak transcription	Osteobl	bone
34	chr8:99198000-99217000	Weak transcription	Muscle Satellite Cultured Cells	--

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