Variant report

Variant	rs4735542
Chromosome Location	chr8:99237927-99237928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10093623	0.82[JPT][hapmap]
rs10093856	0.86[JPT][hapmap]
rs10095887	0.81[JPT][hapmap]
rs1109159	0.81[JPT][hapmap]
rs11987536	0.81[JPT][hapmap]
rs12550682	0.91[JPT][hapmap]
rs12550708	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271095	0.91[JPT][hapmap]
rs1542289	0.85[JPT][hapmap]
rs16896802	0.82[JPT][hapmap]
rs2877460	0.81[JPT][hapmap]
rs3779721	0.81[JPT][hapmap]
rs4734394	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6468620	0.86[JPT][hapmap]
rs6468624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982810	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7009145	0.81[JPT][hapmap]
rs896417	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv6326	chr8:99221674-99263687	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
2	chr8:99198200-99239200	Weak transcription	Lung	lung
3	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:99206600-99239800	Weak transcription	Pancreas	Pancrea
6	chr8:99211200-99243200	Weak transcription	Fetal Lung	lung
7	chr8:99213200-99239800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:99216600-99245400	Weak transcription	Stomach Mucosa	stomach
9	chr8:99217400-99238800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:99217800-99238600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:99218400-99259000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:99225200-99239800	Weak transcription	Gastric	stomach
13	chr8:99226000-99248400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:99226200-99246400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:99226200-99248400	Weak transcription	HSMMtube	muscle
16	chr8:99226200-99267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:99226400-99245800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:99226400-99246200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:99226400-99246200	Weak transcription	Osteobl	bone
20	chr8:99228800-99239000	Weak transcription	Ovary	ovary
21	chr8:99229400-99239200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:99229400-99239400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr8:99229400-99267000	Weak transcription	Left Ventricle	heart
24	chr8:99229600-99238800	Weak transcription	Aorta	Aorta
25	chr8:99229600-99241600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:99231000-99241200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:99231600-99238800	Weak transcription	Fetal Stomach	stomach
28	chr8:99231800-99238800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:99231800-99238800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:99233000-99245800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:99233400-99239200	Weak transcription	Esophagus	oesophagus
32	chr8:99235200-99238400	Weak transcription	Fetal Intestine Large	intestine
33	chr8:99235400-99238400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:99235400-99246000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:99235400-99268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:99235800-99241400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:99236000-99239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:99236000-99248400	Weak transcription	HMEC	breast
39	chr8:99236800-99240000	Weak transcription	Adipose Nuclei	Adipose
40	chr8:99237800-99240800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:99237800-99248400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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