Variant report

Variant	rs4737801
Chromosome Location	chr8:67405159-67405160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1426908	0.80[AFR][1000 genomes]
rs4737800	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001334	0.91[EUR][1000 genomes]
rs72652765	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1026137	chr8:67376420-67408122	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4737801	C8orf46	cis	Artery Tibial	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67380800-67405200	Weak transcription	Aorta	Aorta
2	chr8:67387400-67406400	Weak transcription	Liver	Liver
3	chr8:67396000-67406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67396200-67406000	Weak transcription	NHDF-Ad	bronchial
5	chr8:67398600-67405200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:67398800-67405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:67400200-67406600	Weak transcription	Spleen	Spleen
8	chr8:67400800-67405200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:67402600-67406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:67403200-67405600	Weak transcription	HSMM	muscle
11	chr8:67403200-67406400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:67403400-67405200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:67403400-67405200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:67403400-67405200	Weak transcription	Osteobl	bone
15	chr8:67403400-67405400	Weak transcription	HMEC	breast
16	chr8:67403400-67405400	Weak transcription	NH-A	brain
17	chr8:67403400-67406200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:67403400-67406400	Weak transcription	NHLF	lung
19	chr8:67403600-67405800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:67403600-67406000	Weak transcription	K562	blood
21	chr8:67403600-67406400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:67403600-67406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:67403800-67406400	Weak transcription	HUVEC	blood vessel
24	chr8:67403800-67406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:67404600-67406200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:67405000-67405200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:67405000-67405200	Enhancers	Brain Germinal Matrix	brain

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