Variant report

Variant	rs4740474
Chromosome Location	chr9:11091611-11091612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:11064416..11066663-chr9:11091382..11093294,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10511560	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10511561	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10511562	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10511563	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10511565	0.96[EUR][1000 genomes]
rs10733223	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756174	0.81[EUR][1000 genomes]
rs10756181	0.87[EUR][1000 genomes]
rs10756182	0.94[EUR][1000 genomes]
rs10756183	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10756184	0.93[EUR][1000 genomes]
rs10756185	0.86[EUR][1000 genomes]
rs11790468	0.86[EUR][1000 genomes]
rs11791444	0.85[EUR][1000 genomes]
rs12001095	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1334023	0.94[EUR][1000 genomes]
rs1334024	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1334026	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1334028	0.84[AMR][1000 genomes]
rs1334029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1334030	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334031	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334032	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1334033	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334040	0.87[EUR][1000 genomes]
rs1413378	0.94[EUR][1000 genomes]
rs1413379	0.94[EUR][1000 genomes]
rs16926933	0.81[AMR][1000 genomes]
rs16926935	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16926968	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1889304	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1889305	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1931399	0.91[EUR][1000 genomes]
rs1931400	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1931401	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1931402	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1931403	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2382262	0.84[EUR][1000 genomes]
rs4421446	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4740473	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4740475	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4740477	0.85[EUR][1000 genomes]
rs4741101	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4741102	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4741103	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4741104	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4741105	0.94[EUR][1000 genomes]
rs4741106	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4741107	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4741108	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4741111	0.86[EUR][1000 genomes]
rs55710426	0.95[EUR][1000 genomes]
rs56077961	0.86[EUR][1000 genomes]
rs56217133	0.83[EUR][1000 genomes]
rs56323675	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56348498	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62527007	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62527008	0.96[EUR][1000 genomes]
rs62527036	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62527037	0.95[EUR][1000 genomes]
rs62527046	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62527917	0.83[EUR][1000 genomes]
rs62530676	0.84[AMR][1000 genomes]
rs62530677	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6474632	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6474633	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7024802	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7027297	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7028951	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72711049	0.96[EUR][1000 genomes]
rs72711050	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7847266	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7858303	0.87[EUR][1000 genomes]
rs7858827	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530932	chr9:10381123-11173149	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv533845	chr9:10425554-11318889	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv529475	chr9:10648009-11435662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869473	chr9:10648009-11457399	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1023275	chr9:10681431-11191502	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv613404	chr9:10684803-11133965	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv613405	chr9:10692461-11139558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv613407	chr9:10753219-11280652	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1021035	chr9:10755356-11281192	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv917281	chr9:10786005-11277779	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1024662	chr9:10786074-11244071	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv539999	chr9:10786074-11244071	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1015239	chr9:10992230-11246257	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1024126	chr9:11010337-11102080	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1019436	chr9:11033008-11247205	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1017343	chr9:11075031-11097563	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1027357	chr9:11078863-11097563	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1027901	chr9:11078863-11098891	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1028436	chr9:11083426-11098891	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1029084	chr9:11089044-11218434	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv540001	chr9:11089044-11218434	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv1030741	chr9:11089044-11246257	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11089200-11093200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links