Variant report

Variant	rs4742484
Chromosome Location	chr9:8346503-8346504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10118873	1.00[GIH][hapmap];0.90[EUR][1000 genomes]
rs1021718	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10739161	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10758960	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1500317	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1500318	0.84[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1818072	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1846695	1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1909754	0.83[EUR][1000 genomes]
rs3847289	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848357	0.95[ASN][1000 genomes]
rs6477292	0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6477298	0.83[EUR][1000 genomes]
rs7848596	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854145	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7868050	1.00[JPT][hapmap]
rs7870907	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7873084	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892225	chr9:8345072-8379313	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
3	chr9:8338800-8348600	Weak transcription	Brain Angular Gyrus	brain
4	chr9:8339200-8348000	Weak transcription	Brain Substantia Nigra	brain
5	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
6	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:8339800-8347400	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:8340200-8348000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:8340200-8348600	Weak transcription	Ovary	ovary
10	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:8340400-8346800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
14	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:8344400-8349200	Weak transcription	Fetal Lung	lung
16	chr9:8346000-8347000	Enhancers	NH-A	brain
17	chr9:8346000-8347200	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links