Variant report

Variant	rs4742486
Chromosome Location	chr9:8356521-8356522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10511493	0.90[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12552493	0.84[CHB][hapmap]
rs12554953	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12555585	0.94[CHB][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes]
rs12682697	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs12682993	0.90[CEU][hapmap];0.94[CHB][hapmap]
rs12684395	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs16927547	0.81[CEU][hapmap];0.94[CHB][hapmap]
rs20514	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739578	0.90[CEU][hapmap]
rs3780336	0.81[CEU][hapmap];0.94[CHB][hapmap]
rs3847288	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs3847291	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs72691027	0.90[ASN][1000 genomes]
rs72691034	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72691035	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7848705	0.90[CEU][hapmap];0.94[CHB][hapmap]
rs7848818	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7873084	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892225	chr9:8345072-8379313	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:8340200-8366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8340400-8364600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8340800-8364400	Weak transcription	Fetal Brain Female	brain
7	chr9:8341800-8372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8350000-8363800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8350200-8364600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:8350200-8372400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:8350400-8363200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:8350400-8364000	Weak transcription	Fetal Heart	heart
13	chr9:8353200-8364200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:8356400-8357200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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