Variant report

Variant	rs4742518
Chromosome Location	chr9:8562056-8562057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10511507	1.00[JPT][hapmap]
rs16928162	0.90[AMR][1000 genomes]
rs2033554	1.00[JPT][hapmap]
rs4742525	0.88[AMR][1000 genomes]
rs61600422	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv982611	chr9:8562021-8568194	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8553600-8571000	Weak transcription	Brain Anterior Caudate	brain
3	chr9:8556200-8571200	Weak transcription	Ovary	ovary
4	chr9:8556400-8568200	Weak transcription	Brain Substantia Nigra	brain
5	chr9:8556600-8570600	Weak transcription	Fetal Lung	lung
6	chr9:8557400-8575200	Weak transcription	Fetal Kidney	kidney
7	chr9:8558600-8571000	Weak transcription	Pancreas	Pancrea
8	chr9:8559000-8564200	Weak transcription	Fetal Stomach	stomach
9	chr9:8559800-8562200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:8559800-8567200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8561200-8570600	Weak transcription	Fetal Heart	heart
12	chr9:8561400-8563800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:8561600-8567200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:8561600-8571800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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