Variant report

Variant	rs4742776
Chromosome Location	chr9:102662631-102662632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102659571..102663302-chr9:102667954..102670638,4	MCF-7	breast:
2	chr9:102655013..102658748-chr9:102659114..102662823,3	K562	blood:

Variant related genes	Relation type
ENSG00000255145	Chromatin interaction
ENSG00000136874	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10739788	0.89[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10739789	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10739790	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10760697	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10819701	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10819703	0.80[ASN][1000 genomes]
rs10819704	0.81[ASN][1000 genomes]
rs10988912	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10988916	0.89[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1131339	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs2416939	0.80[ASN][1000 genomes]
rs4743366	0.80[ASN][1000 genomes]
rs4743367	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.80[ASN][1000 genomes]
rs4743368	0.81[ASN][1000 genomes]
rs6478986	0.81[ASN][1000 genomes]
rs7023690	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs7024182	0.80[ASN][1000 genomes]
rs7024419	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs7029481	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7032301	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs7040578	0.89[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7042795	0.81[ASN][1000 genomes]
rs7847479	0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs7870031	0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	esv3366813	chr9:102657446-102670065	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4742776	PPP3R2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102648800-102667800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:102657400-102668200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:102661000-102668200	Weak transcription	Aorta	Aorta

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