Variant report

Variant	rs4743301
Chromosome Location	chr9:101742101-101742102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101742011..101744498-chr9:101748952..101750643,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs882727	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101742800	Enhancers	Adipose Nuclei	Adipose
3	chr9:101737800-101760800	Weak transcription	Gastric	stomach
4	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
5	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach
6	chr9:101740400-101742600	Weak transcription	Left Ventricle	heart
7	chr9:101740400-101746200	Weak transcription	Right Ventricle	heart
8	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
10	chr9:101740400-101756800	Weak transcription	Ovary	ovary
11	chr9:101740600-101742400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:101740600-101742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:101740600-101745400	Weak transcription	Right Atrium	heart
14	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:101740800-101742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:101740800-101742600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:101740800-101745000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:101740800-101745000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:101740800-101745400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:101740800-101745600	Weak transcription	Placenta	Placenta
21	chr9:101740800-101745600	Weak transcription	Pancreas	Pancrea
22	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
23	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:101741000-101742400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:101741000-101742400	Weak transcription	HSMM	muscle
26	chr9:101741000-101745200	Weak transcription	NHDF-Ad	bronchial
27	chr9:101741200-101745800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:101741600-101742600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:101741600-101742800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:101741800-101742600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:101741800-101743000	Enhancers	Fetal Muscle Trunk	muscle
32	chr9:101741800-101746400	Enhancers	Fetal Muscle Leg	muscle
33	chr9:101741800-101748800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:101742000-101742400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:101742000-101742400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:101742000-101743400	Enhancers	HSMMtube	muscle

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