Variant report

Variant	rs4743824
Chromosome Location	chr9:92806644-92806645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:92806402-92807627	A549	lung:	n/a	n/a
2	USF2	chr9:92806635-92806738	Hela-S3	cervix:	n/a	n/a
3	FOSL2	chr9:92806577-92807615	A549	lung:	n/a	chr9:92807022-92807032 chr9:92807022-92807032 chr9:92807022-92807032 chr9:92807393-92807405 chr9:92807395-92807404 chr9:92807022-92807032 chr9:92807398-92807406
4	SP1	chr9:92806542-92807488	A549	lung:	n/a	chr9:92807102-92807116 chr9:92807106-92807115

Variant related genes	Relation type
ENSG00000227555	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10118926	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10122211	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1036701	0.81[EUR][1000 genomes]
rs10820817	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10820826	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991697	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10991831	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1443361	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443362	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17361084	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4142061	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4743823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743827	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744020	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4744040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479330	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7021437	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027342	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894636	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs920753	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs993171	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92800000-92807200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:92806000-92807000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:92806200-92807400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:92806200-92807400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:92806200-92807400	Enhancers	Gastric	stomach
6	chr9:92806400-92807200	Weak transcription	Lung	lung
7	chr9:92806400-92807600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:92806400-92807600	Flanking Active TSS	A549	lung
9	chr9:92806400-92808200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:92806600-92806800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:92806600-92806800	Flanking Active TSS	HUVEC	blood vessel
12	chr9:92806600-92807400	Enhancers	Colon Smooth Muscle	Colon
13	chr9:92806600-92807400	Flanking Active TSS	Hela-S3	cervix
14	chr9:92806600-92807600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:92806600-92807600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:92806600-92807600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:92806600-92807600	Enhancers	NH-A	brain
18	chr9:92806600-92807800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:92806600-92807800	Enhancers	HSMM	muscle
20	chr9:92806600-92808200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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