Variant report

Variant	rs4744068
Chromosome Location	chr9:94358051-94358052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10992000	0.87[EUR][1000 genomes]
rs10992005	0.92[EUR][1000 genomes]
rs10992009	0.91[EUR][1000 genomes]
rs10992022	0.92[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap]
rs10992027	0.92[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs10992028	0.92[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs12554309	0.92[CEU][hapmap]
rs12555698	0.82[EUR][1000 genomes]
rs17584241	0.92[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs72742884	0.91[EUR][1000 genomes]
rs72744404	0.88[EUR][1000 genomes]
rs72744408	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4744068	BLNK	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94352000-94365800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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