Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:92218658..92223647-chr9:92860097..92866006,11	MCF-7	breast:
2	chr9:92218170..92219779-chr9:92860689..92862604,2	MCF-7	breast:
3	chr9:92217541..92219304-chr9:92861323..92862818,15	MCF-7	breast:
4	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
5	chr9:92207554..92215968-chr9:92858794..92866301,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10733741	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026402	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7857974	0.91[AMR][1000 genomes]
rs7859143	0.86[AMR][1000 genomes]
rs7875854	0.82[CEU][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3380801	chr9:92859132-92863030	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv3382751	chr9:92859832-92863030	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:92857800-92862800	Enhancers	Brain Germinal Matrix	brain
3	chr9:92857800-92862800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
5	chr9:92858800-92864400	Weak transcription	Fetal Intestine Large	intestine
6	chr9:92860000-92867600	Weak transcription	Psoas Muscle	Psoas
7	chr9:92860000-92868400	Weak transcription	Liver	Liver
8	chr9:92860400-92864800	Weak transcription	Left Ventricle	heart
9	chr9:92860800-92870200	Weak transcription	Right Ventricle	heart
10	chr9:92861000-92862800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr9:92861200-92862800	Enhancers	HSMM	muscle
12	chr9:92861600-92868400	Weak transcription	HSMMtube	muscle
13	chr9:92861800-92866200	Weak transcription	Fetal Kidney	kidney
14	chr9:92861800-92869200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr9:92861800-92870200	Weak transcription	Pancreas	Pancrea
16	chr9:92862000-92862800	Enhancers	Fetal Muscle Leg	muscle
17	chr9:92862200-92862800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:92862400-92862600	Enhancers	Fetal Stomach	stomach
19	chr9:92862400-92862800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:92862400-92863000	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:92862400-92864400	Weak transcription	Fetal Brain Male	brain
22	chr9:92862400-92864400	Weak transcription	Fetal Lung	lung
23	chr9:92862400-92864400	Weak transcription	Stomach Smooth Muscle	stomach

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