Variant report

Variant	rs4744187
Chromosome Location	chr9:95935293-95935294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821085	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992670	0.89[EUR][1000 genomes]
rs10992671	0.83[JPT][hapmap]
rs12000524	0.83[JPT][hapmap]
rs12348559	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs12552304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554962	0.80[CEU][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs17594889	0.93[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1974379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154079	0.83[JPT][hapmap]
rs4743898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744191	0.88[CEU][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs4744194	0.93[CEU][hapmap]
rs4744198	0.94[CEU][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744199	0.88[CEU][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs60142142	0.87[EUR][1000 genomes]
rs73517595	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73523697	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs753697	0.81[CEU][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs7864826	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95907200-95944400	Weak transcription	Right Atrium	heart
2	chr9:95930400-95935600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:95931400-95935800	Weak transcription	Right Ventricle	heart
4	chr9:95931600-95935600	Weak transcription	Left Ventricle	heart
5	chr9:95931800-95935600	Weak transcription	Pancreas	Pancrea
6	chr9:95934000-95935600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:95934800-95936200	Enhancers	Fetal Lung	lung
8	chr9:95935000-95935400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr9:95935200-95936000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:95935200-95936600	Enhancers	Primary monocytes fromperipheralblood	blood

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