Variant report

Variant	rs4744221
Chromosome Location	chr9:96107802-96107803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs41308906	0.87[ASN][1000 genomes]
rs4743912	0.87[ASN][1000 genomes]
rs4744194	0.87[ASN][1000 genomes]
rs4744211	0.87[ASN][1000 genomes]
rs4744219	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56948231	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58242432	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59616569	0.87[ASN][1000 genomes]
rs60142142	0.87[ASN][1000 genomes]
rs61584994	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512403	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73514552	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73514573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73514578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv972783	chr9:96104996-96108763	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96098600-96108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96102800-96108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:96105800-96108400	Weak transcription	Right Atrium	heart
4	chr9:96106800-96108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:96106800-96108000	Weak transcription	Placenta	Placenta
6	chr9:96106800-96108200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:96106800-96108200	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:96107200-96108000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96107200-96108000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:96107200-96109200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:96107400-96108000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96107400-96113000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr9:96107600-96108000	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr9:96107600-96108000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr9:96107600-96108200	Enhancers	Fetal Lung	lung
16	chr9:96107600-96108400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
17	chr9:96107600-96111600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr9:96107800-96108000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
19	chr9:96107800-96108000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
20	chr9:96107800-96108000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:96107800-96108000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr9:96107800-96108000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
23	chr9:96107800-96108000	Enhancers	Fetal Brain Male	brain
24	chr9:96107800-96108000	Active TSS	Fetal Brain Female	brain
25	chr9:96107800-96108000	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr9:96107800-96108000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr9:96107800-96108000	Bivalent Enhancer	Fetal Stomach	stomach
28	chr9:96107800-96108400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:96107800-96108400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:96107800-96108400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr9:96107800-96109000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr9:96107800-96109000	Active TSS	Brain Germinal Matrix	brain

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