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Variant report
Variant
rs4744233
Chromosome Location
chr9:96143780-96143781
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr9:96141441..96144110-chr9:96213292..96215607,4
MCF-7
breast:
2
chr9:96131323..96133255-chr9:96141524..96143959,2
MCF-7
breast:
3
chr9:96142516..96144205-chr9:96208172..96210030,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000188938
Chromatin interaction
ENSG00000048828
Chromatin interaction
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs4744234
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867386
0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv893576
chr9:95789960-96158277
Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
29 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links