Variant report

Variant	rs4744283
Chromosome Location	chr9:96577178-96577179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:96576939-96577220	SK-N-SH_RA	brain:	n/a	n/a
2	RAD21	chr9:96576832-96577299	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr9:96577040-96577190	AG04449	skin:	n/a	n/a
4	CTCF	chr9:96577034-96577191	A549	lung:	n/a	n/a
5	CTCF	chr9:96577040-96577190	NHEK	skin:	n/a	n/a
6	REST	chr9:96576208-96577295	H1-neurons	neurons:	n/a	chr9:96577015-96577035 chr9:96577114-96577132 chr9:96577117-96577130 chr9:96576306-96576326 chr9:96577018-96577031 chr9:96576518-96576531 chr9:96576657-96576670
7	CTCF	chr9:96577080-96577230	Hela-S3	cervix:	n/a	n/a
8	RAD21	chr9:96576918-96577302	ECC-1	luminal epithelium:	n/a	n/a
9	CTCF	chr9:96577046-96577184	Gliobla	brain:	n/a	n/a
10	CTCF	chr9:96577060-96577210	AG09319	gingival:	n/a	n/a
11	CTCF	chr9:96577060-96577210	HPAF	blood vessel:	n/a	n/a
12	CTCF	chr9:96577080-96577230	HUVEC	blood vessel:	n/a	n/a
13	CTCF	chr9:96577040-96577190	NHDF-neo	bronchial:	n/a	n/a
14	CTCF	chr9:96576872-96577360	MCF-7	breast:	n/a	n/a
15	CTCF	chr9:96577064-96577197	Pancreas_OC	pancreas:	n/a	n/a
16	CTCF	chr9:96577039-96577202	MCF-7	breast:	n/a	n/a
17	CTCF	chr9:96577009-96577208	MCF-7	breast:	n/a	n/a
18	RAD21	chr9:96576853-96577432	HCT-116	colon:	n/a	n/a
19	CTCF	chr9:96577040-96577190	Hela-S3	cervix:	n/a	n/a
20	RAD21	chr9:96576859-96577222	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr9:96577040-96577190	HRE	kidney:	n/a	n/a
22	CTCF	chr9:96577031-96577199	MCF-7	breast:	n/a	n/a
23	CTCF	chr9:96577080-96577230	WERI-Rb-1	eye:	n/a	n/a
24	CTCF	chr9:96577060-96577210	SK-N-SH_RA	brain:	n/a	n/a
25	RAD21	chr9:96576975-96577278	Hela-S3	cervix:	n/a	n/a
26	SMC3	chr9:96577009-96577275	Hela-S3	cervix:	n/a	n/a
27	CTCF	chr9:96577024-96577210	MCF-7	breast:	n/a	n/a
28	RAD21	chr9:96576950-96577375	HCT-116	colon:	n/a	n/a
29	CTCF	chr9:96577024-96577210	Hela-S3	cervix:	n/a	n/a
30	CTCF	chr9:96576912-96577231	MCF-7	breast:	n/a	n/a
31	CTCF	chr9:96577060-96577210	HEK293	kidney:	n/a	n/a
32	CTCF	chr9:96577040-96577190	HRPEpiC	eye:	n/a	n/a
33	RAD21	chr9:96576854-96577409	H1-hESC	embryonic stem cell:	n/a	n/a
34	RAD21	chr9:96576941-96577305	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr9:96577040-96577190	WERI-Rb-1	eye:	n/a	n/a
36	CTCF	chr9:96576999-96577230	H1-hESC	embryonic stem cell:	n/a	n/a
37	ZNF143	chr9:96576979-96577276	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr9:96576851-96577412	A549	lung:	n/a	n/a
39	CTCF	chr9:96577060-96577210	MCF-7	breast:	n/a	n/a
40	CTCF	chr9:96576893-96577249	H1-hESC	embryonic stem cell:	n/a	n/a
41	CTCF	chr9:96577009-96577216	MCF-7	breast:	n/a	n/a
42	CTCF	chr9:96577040-96577190	HPF	lung:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96573213..96577608-chr9:96586073..96591162,5	K562	blood:
2	chr9:96576722..96579427-chr9:96585634..96588244,2	MCF-7	breast:
3	chr9:96576702..96577356-chr9:96724518..96725590,3	MCF-7	breast:

No data

Variant related genes	Relation type
MIR4291	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10739958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761281	0.82[ASN][1000 genomes]
rs11789922	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11999651	0.81[LWK][hapmap];0.86[MEX][hapmap];0.90[YRI][hapmap]
rs12001030	0.94[AFR][1000 genomes]
rs12003628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003661	0.89[YRI][hapmap]
rs13283075	0.93[AFR][1000 genomes]
rs13302628	0.96[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96575600-96577200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:96575800-96577800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96576000-96577200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:96576000-96577600	Bivalent Enhancer	Fetal Stomach	stomach
5	chr9:96576000-96578000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:96576200-96577600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:96576400-96577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96576400-96578000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:96576600-96577200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:96576600-96577400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:96576800-96577400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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