Variant report

Variant	rs4745507
Chromosome Location	chr9:78751632-78751633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11144761	0.96[ASN][1000 genomes]
rs11144763	0.91[ASN][1000 genomes]
rs11144764	0.82[ASN][1000 genomes]
rs1338744	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1416325	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4745507	PSAT1	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78659600-78751800	Weak transcription	Small Intestine	intestine
2	chr9:78688000-78774000	Weak transcription	Left Ventricle	heart
3	chr9:78722800-78751800	Weak transcription	Pancreas	Pancrea
4	chr9:78723800-78752600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:78724000-78767000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:78725400-78766400	Weak transcription	Thymus	Thymus
7	chr9:78730200-78755000	Weak transcription	Aorta	Aorta
8	chr9:78737600-78751800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:78745200-78753000	Weak transcription	Fetal Thymus	thymus
10	chr9:78745400-78758800	Weak transcription	Primary T cells from cord blood	blood
11	chr9:78747000-78751800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:78747200-78751800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:78748400-78769200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:78750200-78751800	Weak transcription	Lung	lung
15	chr9:78750400-78752000	Enhancers	Adipose Nuclei	Adipose
16	chr9:78750400-78752200	Strong transcription	Fetal Intestine Large	intestine
17	chr9:78750400-78752600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:78750600-78752200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:78750600-78752200	Enhancers	NHDF-Ad	bronchial
20	chr9:78750600-78753000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:78750600-78753600	Enhancers	Ovary	ovary
22	chr9:78750800-78752200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:78750800-78752200	Enhancers	Colon Smooth Muscle	Colon
24	chr9:78750800-78753200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr9:78751000-78752400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr9:78751200-78752200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr9:78751200-78752600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr9:78751200-78752800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:78751400-78752200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr9:78751400-78752400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:78751400-78752400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:78751400-78752600	Strong transcription	Fetal Intestine Small	intestine
33	chr9:78751600-78752800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr9:78751600-78773200	Weak transcription	Fetal Stomach	stomach

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