Variant report

Variant	rs4745545
Chromosome Location	chr9:79040285-79040286
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10121699	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124695	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10869767	0.80[ASN][1000 genomes]
rs10869773	0.83[ASN][1000 genomes]
rs11144880	0.81[ASN][1000 genomes]
rs11788095	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12057052	0.87[ASN][1000 genomes]
rs13288968	0.84[ASN][1000 genomes]
rs13295433	0.83[ASN][1000 genomes]
rs1535845	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1961995	0.88[ASN][1000 genomes]
rs2002423	0.91[ASN][1000 genomes]
rs2490572	0.83[ASN][1000 genomes]
rs2490574	0.86[ASN][1000 genomes]
rs2490576	0.88[ASN][1000 genomes]
rs2490583	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2490584	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2490586	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2501920	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2501930	0.85[ASN][1000 genomes]
rs2501932	0.86[ASN][1000 genomes]
rs2501937	0.83[ASN][1000 genomes]
rs2501938	0.83[ASN][1000 genomes]
rs2501939	0.83[ASN][1000 genomes]
rs4745544	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4745546	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6560517	0.83[ASN][1000 genomes]
rs6560519	0.91[AMR][1000 genomes]
rs7847608	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849239	0.83[ASN][1000 genomes]
rs7861089	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv3451027	chr9:79021447-79056132	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79034800-79046000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:79038000-79046800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:79039400-79041400	Enhancers	HepG2	liver

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