Variant report

Variant	rs4745549
Chromosome Location	chr9:79048219-79048220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10781361	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10781362	0.86[ASN][1000 genomes]
rs10869767	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10869773	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11144864	0.86[AMR][1000 genomes]
rs11144865	0.87[AMR][1000 genomes]
rs11144866	0.81[AMR][1000 genomes]
rs11144871	0.86[AMR][1000 genomes]
rs11144880	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11144898	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11144899	0.86[ASN][1000 genomes]
rs13295433	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13302654	0.88[AMR][1000 genomes]
rs2377639	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs35837300	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3739729	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4372070	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4745541	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4745548	0.86[ASN][1000 genomes]
rs6560517	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6560519	0.85[ASN][1000 genomes]
rs6560520	0.85[ASN][1000 genomes]
rs6560521	0.85[ASN][1000 genomes]
rs6560522	0.83[ASN][1000 genomes]
rs7038837	0.82[ASN][1000 genomes]
rs7849239	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7861089	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv3451027	chr9:79021447-79056132	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv520423	chr9:79047117-79065299	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79046200-79048600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:79047200-79049200	Enhancers	HepG2	liver
3	chr9:79047400-79049400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:79047600-79048400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:79048000-79049400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:79048000-79049400	Enhancers	NH-A	brain
7	chr9:79048000-79049400	Enhancers	Osteobl	bone
8	chr9:79048200-79048600	Enhancers	Esophagus	oesophagus
9	chr9:79048200-79049200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:79048200-79049200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:79048200-79049200	Enhancers	A549	lung
12	chr9:79048200-79049200	Enhancers	GM12878-XiMat	blood
13	chr9:79048200-79049400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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