Variant report

Variant	rs4748472
Chromosome Location	chr10:18776197-18776198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10828779	0.89[ASW][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1409205	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4748472	C10orf140	cis	cerebellum	SCAN
rs4748472	NSUN6	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18763600-18778400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18772000-18786400	Weak transcription	Ovary	ovary
4	chr10:18773000-18776400	Enhancers	Fetal Heart	heart
5	chr10:18775000-18776200	Enhancers	Fetal Lung	lung
6	chr10:18775200-18776200	Enhancers	Left Ventricle	heart
7	chr10:18775400-18776200	Enhancers	Right Ventricle	heart
8	chr10:18775600-18776200	Enhancers	Right Atrium	heart
9	chr10:18775600-18778400	Weak transcription	Fetal Intestine Small	intestine
10	chr10:18775600-18779000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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