Variant report

Variant	rs474855
Chromosome Location	chr11:64566771-64566772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64538525..64541071-chr11:64564833..64567027,2	K562	blood:
2	chr11:64542437..64548103-chr11:64565883..64573066,9	K562	blood:
3	chr11:64566105..64568273-chr11:64610113..64612842,2	MCF-7	breast:
4	chr11:64544683..64548200-chr11:64565443..64572182,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168066	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000171219	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs540012	0.90[AFR][1000 genomes]
rs57952712	1.00[EUR][1000 genomes]
rs9285810	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
4	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
8	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
9	nsv555202	chr11:64477050-64573589	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv468597	chr11:64477050-64584959	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv468598	chr11:64477050-64584959	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv555203	chr11:64477050-64584959	Strong transcription Genic enhancers Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
14	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
15	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
16	nsv897702	chr11:64532579-64584231	Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
17	nsv897703	chr11:64538346-64574200	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
18	nsv519117	chr11:64546391-64573589	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
19	nsv519478	chr11:64546391-64584987	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
20	nsv555204	chr11:64561200-64574200	Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv555205	chr11:64561200-64575505	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv555206	chr11:64563757-64574200	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64547200-64569600	Weak transcription	Small Intestine	intestine
2	chr11:64547200-64569600	Weak transcription	NH-A	brain
3	chr11:64547200-64569800	Weak transcription	Osteobl	bone
4	chr11:64547200-64570000	Weak transcription	Fetal Kidney	kidney
5	chr11:64547400-64569600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:64547400-64569800	Weak transcription	NHEK	skin
7	chr11:64547600-64567000	Weak transcription	HUVEC	blood vessel
8	chr11:64547600-64569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:64547800-64568800	Weak transcription	Dnd41	blood
10	chr11:64548800-64568800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:64550200-64569400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:64550400-64570000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:64553800-64568800	Strong transcription	Fetal Stomach	stomach
14	chr11:64555400-64568600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:64555400-64568800	Strong transcription	Thymus	Thymus
16	chr11:64555400-64569400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:64555400-64570000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:64555600-64567600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:64555600-64568600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:64555600-64569000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:64555600-64569800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:64555800-64567600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:64555800-64569000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:64556000-64569000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:64557800-64569600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:64558000-64569000	Strong transcription	Fetal Intestine Small	intestine
27	chr11:64558200-64570000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:64560800-64567800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:64561400-64569400	Weak transcription	Stomach Mucosa	stomach
30	chr11:64561600-64570000	Weak transcription	Fetal Heart	heart
31	chr11:64562000-64570000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:64562000-64570000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:64562200-64566800	Strong transcription	Brain Substantia Nigra	brain
34	chr11:64562800-64568600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:64563000-64569600	Weak transcription	NHDF-Ad	bronchial
36	chr11:64563200-64567600	Strong transcription	Adipose Nuclei	Adipose
37	chr11:64563200-64567600	Strong transcription	Fetal Thymus	thymus
38	chr11:64563200-64567800	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr11:64563200-64568000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:64563200-64568400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:64563400-64567600	Strong transcription	Brain Hippocampus Middle	brain
42	chr11:64563400-64568400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:64563400-64568800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:64563600-64568200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:64563800-64568200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:64564000-64569000	Weak transcription	Fetal Lung	lung
47	chr11:64564000-64570000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:64564200-64569800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:64564400-64567000	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:64564400-64567400	Strong transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links