Variant report

Variant	rs4749287
Chromosome Location	chr10:28254536-28254537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10826370	0.96[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11006758	0.82[EUR][1000 genomes]
rs11006764	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs11006769	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs11006779	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs11006786	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11595397	0.82[EUR][1000 genomes]
rs11596317	0.89[EUR][1000 genomes]
rs11598344	0.86[EUR][1000 genomes]
rs12772278	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs12779352	0.89[EUR][1000 genomes]
rs12780829	0.81[CEU][hapmap]
rs1419366	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1970631	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2003192	0.85[EUR][1000 genomes]
rs2368272	0.83[EUR][1000 genomes]
rs2368273	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs3824590	0.89[EUR][1000 genomes]
rs4237386	0.87[EUR][1000 genomes]
rs4265508	0.85[EUR][1000 genomes]
rs4303140	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs4420169	0.84[EUR][1000 genomes]
rs4494226	0.88[EUR][1000 genomes]
rs4590766	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4600119	0.89[EUR][1000 genomes]
rs4628591	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4749274	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4749285	0.85[EUR][1000 genomes]
rs4749286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481490	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6481491	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7074562	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7087095	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7089040	0.96[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7893462	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7896951	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7897553	0.96[CEU][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes]
rs7907415	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7907500	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7924172	0.96[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28239800-28287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28248000-28263400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:28251000-28283800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:28252200-28254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:28254200-28265400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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