Variant report

Variant	rs4750166
Chromosome Location	chr10:6286606-6286607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6284117..6287079-chr10:6288747..6291631,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10795935	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10795936	0.90[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10906079	0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894118	0.83[ASW][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7894544	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906455	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9733630	0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6270600-6288600	Weak transcription	Fetal Kidney	kidney
2	chr10:6273600-6287800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:6275800-6291000	Weak transcription	Psoas Muscle	Psoas
4	chr10:6276400-6288000	Weak transcription	Brain Angular Gyrus	brain
5	chr10:6276400-6288800	Weak transcription	Right Ventricle	heart
6	chr10:6276600-6286800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:6276600-6288800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:6276800-6303800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:6278600-6287400	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:6278600-6288800	Weak transcription	Aorta	Aorta
11	chr10:6278600-6297600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:6278800-6288600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:6278800-6288800	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:6278800-6289400	Weak transcription	Small Intestine	intestine
15	chr10:6278800-6295400	Weak transcription	Pancreas	Pancrea
16	chr10:6278800-6312400	Weak transcription	Thymus	Thymus
17	chr10:6279000-6290200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:6279000-6291600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:6279200-6288800	Weak transcription	Brain Anterior Caudate	brain
20	chr10:6279200-6289400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:6279200-6289400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:6279200-6303400	Weak transcription	Primary T cells from cord blood	blood
23	chr10:6279400-6288600	Weak transcription	Ovary	ovary
24	chr10:6279400-6289000	Weak transcription	Brain Germinal Matrix	brain
25	chr10:6281400-6286800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:6281400-6289000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:6281400-6289400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:6281400-6309200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:6281600-6288600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:6281600-6288800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:6281600-6288800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:6281600-6288800	Weak transcription	Spleen	Spleen
33	chr10:6281600-6289200	Weak transcription	HSMMtube	muscle
34	chr10:6281600-6290800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:6281800-6288800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:6281800-6288800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:6282200-6287800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:6282200-6300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:6282800-6289000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr10:6282800-6289000	Weak transcription	NH-A	brain
41	chr10:6283600-6287400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:6283600-6289600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:6284600-6288800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:6284600-6291000	Weak transcription	Dnd41	blood
45	chr10:6285600-6297600	Weak transcription	Adipose Nuclei	Adipose
46	chr10:6285600-6297800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:6285800-6288800	Weak transcription	Fetal Stomach	stomach
48	chr10:6285800-6302000	Weak transcription	Primary B cells from cord blood	blood
49	chr10:6286200-6286800	Genic enhancers	A549	lung
50	chr10:6286400-6286800	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links