Variant report

Variant	rs475050
Chromosome Location	chr3:23023574-23023575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs711721	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv522927	chr3:23023574-23026888	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23019200-23024800	Enhancers	Fetal Heart	heart
2	chr3:23021800-23023800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:23022000-23023600	Weak transcription	Hela-S3	cervix
4	chr3:23022000-23024400	Weak transcription	Brain Germinal Matrix	brain
5	chr3:23022200-23024400	Weak transcription	Placenta	Placenta
6	chr3:23022200-23024600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:23022600-23023600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:23022800-23025000	Enhancers	HSMMtube	muscle
9	chr3:23023200-23024600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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