Variant report

Variant	rs4752043
Chromosome Location	chr10:116382508-116382509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116380101..116382698-chr10:116387153..116390968,3	MCF-7	breast:
2	chr10:116381677..116383578-chr10:116393467..116395747,2	MCF-7	breast:
3	chr10:116310031..116311847-chr10:116382346..116385171,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10885589	0.82[AMR][1000 genomes]
rs1109267	0.82[AMR][1000 genomes]
rs11196807	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196819	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196828	0.81[AMR][1000 genomes]
rs11599283	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12220330	0.84[AMR][1000 genomes]
rs12776647	0.82[AMR][1000 genomes]
rs17719089	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904491	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116367800-116382600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:116370600-116382600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:116372000-116383600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:116372400-116382600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:116375800-116382600	Weak transcription	Fetal Intestine Large	intestine
6	chr10:116376400-116382600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:116376400-116383000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:116378200-116385000	Enhancers	Right Atrium	heart
9	chr10:116378800-116382600	Weak transcription	HSMMtube	muscle
10	chr10:116378800-116382800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:116378800-116383000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:116378800-116391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:116379000-116382600	Weak transcription	Liver	Liver
14	chr10:116379400-116383000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:116379600-116382800	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:116379600-116383600	Weak transcription	Aorta	Aorta
17	chr10:116379600-116383600	Enhancers	Fetal Heart	heart
18	chr10:116380000-116384200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:116381200-116385000	Enhancers	Left Ventricle	heart
20	chr10:116381400-116383400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:116381400-116385200	Enhancers	Stomach Mucosa	stomach
22	chr10:116381800-116383400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:116381800-116383400	Enhancers	Ovary	ovary
24	chr10:116382000-116383400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr10:116382000-116384000	Weak transcription	Pancreas	Pancrea
26	chr10:116382000-116384400	Enhancers	Gastric	stomach
27	chr10:116382000-116385000	Weak transcription	Right Ventricle	heart
28	chr10:116382000-116385600	Enhancers	HepG2	liver
29	chr10:116382200-116383600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr10:116382200-116383600	Enhancers	Fetal Kidney	kidney
31	chr10:116382200-116384000	Enhancers	Adipose Nuclei	Adipose
32	chr10:116382200-116384200	Weak transcription	Esophagus	oesophagus
33	chr10:116382200-116384400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:116382200-116384400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:116382200-116384400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr10:116382200-116385000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr10:116382400-116383000	Enhancers	Hela-S3	cervix
38	chr10:116382400-116383200	Enhancers	Brain Hippocampus Middle	brain
39	chr10:116382400-116383200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr10:116382400-116383200	Enhancers	Fetal Lung	lung
41	chr10:116382400-116383200	Enhancers	Lung	lung
42	chr10:116382400-116383200	Enhancers	A549	lung
43	chr10:116382400-116383200	Enhancers	HSMM	muscle
44	chr10:116382400-116383400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:116382400-116383400	Enhancers	Brain Anterior Caudate	brain
46	chr10:116382400-116383800	Enhancers	Duodenum Mucosa	Duodenum
47	chr10:116382400-116384000	Enhancers	Fetal Intestine Small	intestine
48	chr10:116382400-116384200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:116382400-116384200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:116382400-116384200	Enhancers	Colon Smooth Muscle	Colon

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