Variant report

Variant	rs4753854
Chromosome Location	chr11:108855141-108855142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10890917	0.90[ASN][1000 genomes]
rs1834455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108845000-108856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:108853800-108857400	Enhancers	Osteobl	bone
4	chr11:108854000-108855200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:108854000-108855600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:108854200-108856000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:108854400-108857800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:108854600-108855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:108854800-108856600	Enhancers	NH-A	brain
10	chr11:108854800-108857000	Enhancers	Fetal Heart	heart
11	chr11:108854800-108857200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:108855000-108855600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:108855000-108856000	Enhancers	Left Ventricle	heart
14	chr11:108855000-108856000	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links