Variant report

Variant	rs4754710
Chromosome Location	chr11:100765169-100765170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10791431	0.92[AFR][1000 genomes]
rs11224507	1.00[AFR][1000 genomes]
rs11224509	0.97[AFR][1000 genomes]
rs11534487	0.97[AFR][1000 genomes]
rs1893683	1.00[AFR][1000 genomes]
rs1943500	0.88[AFR][1000 genomes]
rs2165664	0.97[AFR][1000 genomes]
rs2165665	0.98[AFR][1000 genomes]
rs2407823	0.87[AFR][1000 genomes]
rs2407825	0.93[AFR][1000 genomes]
rs2897779	0.87[AFR][1000 genomes]
rs4754708	1.00[AFR][1000 genomes]
rs4754709	1.00[AFR][1000 genomes]
rs533571	0.80[AMR][1000 genomes]
rs557834	0.87[EUR][1000 genomes]
rs56320976	0.93[AFR][1000 genomes]
rs569336	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs590616	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100755000-100766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100758600-100773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:100761000-100773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:100761600-100777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
10	chr11:100761800-100773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100762800-100779000	Weak transcription	NH-A	brain
12	chr11:100763800-100766200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:100764600-100765200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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