Variant report

Variant	rs4755332
Chromosome Location	chr11:45666311-45666312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10769157	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038597	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038608	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1348963	0.99[ASN][1000 genomes]
rs1348964	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348965	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447569	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36106594	0.83[EUR][1000 genomes]
rs4148897	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4148900	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4148904	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45486999	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs45604433	0.80[EUR][1000 genomes]
rs4756008	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121696	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45659200-45669400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45663000-45666800	Enhancers	HUVEC	blood vessel
3	chr11:45663600-45671200	Weak transcription	Spleen	Spleen
4	chr11:45665600-45667600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:45665600-45671000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:45665600-45674400	Weak transcription	HMEC	breast
7	chr11:45665600-45680000	Weak transcription	Gastric	stomach
8	chr11:45665800-45666800	Weak transcription	Lung	lung
9	chr11:45665800-45667800	Weak transcription	NHEK	skin
10	chr11:45665800-45669400	Weak transcription	Left Ventricle	heart
11	chr11:45665800-45670600	Weak transcription	Fetal Brain Female	brain
12	chr11:45665800-45670600	Weak transcription	Right Ventricle	heart
13	chr11:45665800-45671200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:45665800-45671800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:45666200-45671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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