Variant report

Variant	rs4755439
Chromosome Location	chr11:36187878-36187879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1014357	0.84[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs10836513	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10836514	0.83[ASN][1000 genomes]
rs11033473	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11033476	0.84[ASN][1000 genomes]
rs11033477	0.84[ASN][1000 genomes]
rs11033478	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11499817	0.83[ASN][1000 genomes]
rs12269916	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs12278757	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs12282945	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12417496	0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs12417511	0.83[ASN][1000 genomes]
rs12420381	0.84[ASN][1000 genomes]
rs12575549	0.83[ASN][1000 genomes]
rs12576371	0.82[ASN][1000 genomes]
rs35567395	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4612777	0.92[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs4756291	0.84[ASN][1000 genomes]
rs4756292	0.84[ASN][1000 genomes]
rs59459290	0.83[ASN][1000 genomes]
rs6416082	0.84[ASN][1000 genomes]
rs6416083	0.84[ASN][1000 genomes]
rs7117510	0.83[ASN][1000 genomes]
rs7121939	0.83[ASN][1000 genomes]
rs72935569	0.89[EUR][1000 genomes]
rs72935599	0.84[ASN][1000 genomes]
rs72935601	0.84[ASN][1000 genomes]
rs7929112	0.85[ASN][1000 genomes]
rs7933303	0.89[ASN][1000 genomes]
rs7943467	0.82[ASN][1000 genomes]
rs7943612	0.89[ASN][1000 genomes]
rs7948709	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7951966	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4755439	WT1	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36179600-36193000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:36181200-36188000	Enhancers	Fetal Lung	lung
4	chr11:36184400-36189200	Weak transcription	Pancreas	Pancrea
5	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:36184600-36188400	Enhancers	HUVEC	blood vessel
7	chr11:36184800-36206200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:36185200-36189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:36185200-36190200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:36185200-36192200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:36185200-36203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:36185200-36207800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:36186000-36191000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:36186200-36188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:36186200-36189200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:36186200-36189800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:36186400-36188000	Enhancers	Brain Germinal Matrix	brain
18	chr11:36186400-36188800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr11:36186400-36199800	Weak transcription	HSMMtube	muscle
20	chr11:36186400-36207600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:36186600-36190000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:36186600-36196800	Weak transcription	NHEK	skin
23	chr11:36186600-36206000	Weak transcription	HSMM	muscle
24	chr11:36187200-36188000	Enhancers	Fetal Brain Male	brain
25	chr11:36187200-36192200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:36187600-36188000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:36187600-36188600	Enhancers	Fetal Kidney	kidney
28	chr11:36187800-36188000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:36187800-36188000	Enhancers	Psoas Muscle	Psoas
30	chr11:36187800-36188000	Enhancers	Spleen	Spleen
31	chr11:36187800-36188200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:36187800-36188200	Enhancers	Fetal Heart	heart
33	chr11:36187800-36189000	Weak transcription	Fetal Stomach	stomach
34	chr11:36187800-36196800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:36187800-36197200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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