Variant report

Variant	rs4756005
Chromosome Location	chr11:45576417-45576418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1488674	0.91[ASN][1000 genomes]
rs4755328	0.91[ASN][1000 genomes]
rs6485632	0.91[ASN][1000 genomes]
rs7131249	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4756005	CD82	cis	multi-tissue	Pritchard
rs4756005	CRY2	cis	multi-tissue	Pritchard
rs4756005	DFFA	cis	Liver	GTEx
rs4756005	HARBI1	cis	parietal	SCAN
rs4756005	DFFA	trans	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45571200-45581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45575000-45578600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr11:45575200-45577200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:45575400-45578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45575800-45579400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:45576000-45577000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:45576000-45577000	Enhancers	Adipose Nuclei	Adipose
8	chr11:45576200-45581400	Weak transcription	Fetal Brain Male	brain
9	chr11:45576400-45578400	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:45576400-45581400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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