Variant report
| Variant | rs4756153 |
|---|---|
| Chromosome Location | chr11:34507879-34507880 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:34504383..34506543-chr11:34507596..34509687,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000264667 | TF binding region |
| ENSG00000264667 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10836244 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11032727 | 0.86[ASN][1000 genomes] |
| rs1408035 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2284365 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2284367 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2284368 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2284369 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2420388 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3758733 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3781711 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4755372 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4755373 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4756148 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4756154 | 0.85[ASN][1000 genomes] |
| rs6484722 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7113917 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs769217 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs769218 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs942223 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897207 | chr11:34253683-34621004 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv897208 | chr11:34257064-34562247 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv897209 | chr11:34309519-34548906 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 4 | nsv832114 | chr11:34424428-34607851 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4756153 | CAT | Cis_1M | lymphoblastoid | RTeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
