Variant report

Variant	rs475618
Chromosome Location	chr10:89948082-89948083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs481840	0.86[ASN][1000 genomes]
rs510727	0.86[ASN][1000 genomes]
rs536243	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs539299	0.88[ASN][1000 genomes]
rs640906	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89939000-89950000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:89944600-89950400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:89946200-89955200	Weak transcription	Aorta	Aorta
4	chr10:89946400-89953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:89946400-89955000	Weak transcription	Right Atrium	heart
6	chr10:89946400-89955200	Weak transcription	Placenta	Placenta
7	chr10:89946400-89955200	Weak transcription	Psoas Muscle	Psoas
8	chr10:89946600-89950200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:89946800-89954000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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