Variant report

Variant	rs4756224
Chromosome Location	chr11:35391408-35391409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35385110..35389283-chr11:35389686..35393364,5	MCF-7	breast:
2	chr11:35386128..35387848-chr11:35389214..35391974,2	K562	blood:
3	chr11:35286600..35289534-chr11:35390659..35392219,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10836382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836384	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033097	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11033098	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11033099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294149	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794012	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065030	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7103668	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104229	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7116961	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9704794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35385800-35394600	Weak transcription	Left Ventricle	heart
2	chr11:35385800-35394600	Weak transcription	Psoas Muscle	Psoas
3	chr11:35386400-35398600	Weak transcription	Fetal Brain Female	brain
4	chr11:35387600-35392800	Weak transcription	Pancreas	Pancrea
5	chr11:35388000-35391800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:35388000-35392000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:35388600-35394600	Weak transcription	Right Ventricle	heart
8	chr11:35389000-35406400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:35389200-35408600	Weak transcription	Aorta	Aorta
10	chr11:35389800-35394400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:35389800-35398400	Weak transcription	NHLF	lung
12	chr11:35389800-35398400	Weak transcription	Osteobl	bone
13	chr11:35390000-35391800	Enhancers	Stomach Smooth Muscle	stomach
14	chr11:35390400-35401800	Weak transcription	Right Atrium	heart
15	chr11:35390600-35392800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:35390600-35393000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:35390600-35393800	Weak transcription	NHDF-Ad	bronchial
18	chr11:35390600-35399000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:35390600-35401800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:35390800-35392400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:35390800-35392800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:35390800-35394600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:35390800-35394600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:35390800-35395000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:35391000-35393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:35391000-35394600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:35391000-35395000	Weak transcription	Fetal Heart	heart
28	chr11:35391200-35392400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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