Variant report

Variant	rs4756320
Chromosome Location	chr11:36463422-36463423
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36456317..36458614-chr11:36460848..36463525,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAF6-3	chr11:36461899-36465571	ucscGeneNc_uc001mwq_1

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10742373	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs10742374	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs10836562	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755452	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756317	1.00[ASN][1000 genomes]
rs4756319	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4756321	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756322	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs7117218	0.90[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7943771	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36432000-36467800	Weak transcription	Esophagus	oesophagus
5	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
8	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:36448400-36463800	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr11:36448400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:36448600-36470600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
13	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:36449200-36467800	Weak transcription	Ovary	ovary
16	chr11:36449200-36469200	Weak transcription	Placenta	Placenta
17	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:36449600-36467600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:36449600-36469000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:36449600-36474000	Weak transcription	Right Ventricle	heart
23	chr11:36450000-36468400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:36452400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:36452800-36473800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:36453400-36464400	Weak transcription	Brain Angular Gyrus	brain
27	chr11:36453400-36471200	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:36453600-36471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:36454000-36464800	Weak transcription	Brain Substantia Nigra	brain
30	chr11:36454200-36467400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:36454200-36468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:36454200-36468400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:36454200-36468600	Weak transcription	HMEC	breast
34	chr11:36454200-36468800	Weak transcription	Osteobl	bone
35	chr11:36454800-36473600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:36455600-36464400	Weak transcription	HSMM	muscle
37	chr11:36455800-36473800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:36456600-36465000	Strong transcription	Fetal Intestine Small	intestine
39	chr11:36456600-36470800	Strong transcription	Fetal Intestine Large	intestine
40	chr11:36457400-36471400	Weak transcription	Stomach Mucosa	stomach
41	chr11:36459200-36465400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:36459400-36463800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:36459600-36468400	Weak transcription	Fetal Lung	lung
44	chr11:36460200-36464800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:36460200-36467800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:36460600-36464400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:36461000-36467800	Weak transcription	Pancreas	Pancrea
48	chr11:36461200-36465000	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:36461200-36467800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:36461600-36466400	Weak transcription	Colonic Mucosa	Colon

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