Variant report

Variant	rs4757417
Chromosome Location	chr11:16615280-16615281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10741703	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741705	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832641	0.88[ASN][1000 genomes]
rs10832665	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023983	0.88[ASN][1000 genomes]
rs11600664	0.88[ASN][1000 genomes]
rs11603453	0.90[ASN][1000 genomes]
rs11603503	0.90[ASN][1000 genomes]
rs12795502	0.88[ASN][1000 genomes]
rs12799418	0.85[ASN][1000 genomes]
rs12801314	0.88[ASN][1000 genomes]
rs4508168	0.96[ASN][1000 genomes]
rs5011327	0.88[ASN][1000 genomes]
rs7935756	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:16608800-16617200	Weak transcription	Brain Germinal Matrix	brain
3	chr11:16610200-16617200	Weak transcription	K562	blood
4	chr11:16610400-16617000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16610400-16617800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16610400-16623800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16612200-16615400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16614200-16616000	Enhancers	Fetal Heart	heart
9	chr11:16615200-16616000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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