Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11024796	0.83[GIH][hapmap];0.93[JPT][hapmap]
rs11024798	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12223440	0.82[ASN][1000 genomes]
rs12786014	0.89[AMR][1000 genomes]
rs36002518	0.89[AMR][1000 genomes]
rs4335522	0.95[AMR][1000 genomes]
rs4341512	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4388869	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4528305	0.84[AMR][1000 genomes]
rs4539305	0.82[ASN][1000 genomes]
rs4550205	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4600183	1.00[ASN][1000 genomes]
rs4757722	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6483543	0.89[AMR][1000 genomes]
rs6483544	0.89[AMR][1000 genomes]
rs7108374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124817	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71486886	0.89[AMR][1000 genomes]
rs7931464	0.82[CEU][hapmap];0.89[AMR][1000 genomes]
rs7944558	0.87[CEU][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18831200-18841000	Weak transcription	Fetal Intestine Small	intestine

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